Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
KJL45957.1 | dinB_4 | RS84_02576 | RS84_03411 | Hypothetical protein. | DNA polymerase IV. | 0.706 |
KJL45957.1 | recA | RS84_02576 | RS84_03276 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.506 |
KJL46771.1 | KJL46772.1 | RS84_03412 | RS84_03413 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KJL46771.1 | dinB_4 | RS84_03412 | RS84_03411 | Hypothetical protein. | DNA polymerase IV. | 0.613 |
KJL46771.1 | trmB | RS84_03412 | RS84_03414 | Hypothetical protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.773 |
KJL46772.1 | KJL46771.1 | RS84_03413 | RS84_03412 | Hypothetical protein. | Hypothetical protein. | 0.773 |
KJL46772.1 | dinB_4 | RS84_03413 | RS84_03411 | Hypothetical protein. | DNA polymerase IV. | 0.613 |
KJL46772.1 | trmB | RS84_03413 | RS84_03414 | Hypothetical protein. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.785 |
KJL49510.1 | dinB_4 | RS84_00223 | RS84_03411 | Hypothetical protein. | DNA polymerase IV. | 0.806 |
KJL49510.1 | recA | RS84_00223 | RS84_03276 | Hypothetical protein. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.802 |
dinB_4 | KJL45957.1 | RS84_03411 | RS84_02576 | DNA polymerase IV. | Hypothetical protein. | 0.706 |
dinB_4 | KJL46771.1 | RS84_03411 | RS84_03412 | DNA polymerase IV. | Hypothetical protein. | 0.613 |
dinB_4 | KJL46772.1 | RS84_03411 | RS84_03413 | DNA polymerase IV. | Hypothetical protein. | 0.613 |
dinB_4 | KJL49510.1 | RS84_03411 | RS84_00223 | DNA polymerase IV. | Hypothetical protein. | 0.806 |
dinB_4 | dnaN | RS84_03411 | RS84_01792 | DNA polymerase IV. | DNA polymerase III subunit beta; Confers DNA tethering and processivity to DNA polymerases and other proteins. Acts as a clamp, forming a ring around DNA (a reaction catalyzed by the clamp-loading complex) which diffuses in an ATP- independent manner freely and bidirectionally along dsDNA. Initially characterized for its ability to contact the catalytic subunit of DNA polymerase III (Pol III), a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria; Pol III exhibits 3'-5' exonuclease proofreading activity. The beta chain is required for initiation of [...] | 0.819 |
dinB_4 | ftsW_1 | RS84_03411 | RS84_01832 | DNA polymerase IV. | Lipid II flippase FtsW; Belongs to the SEDS family. | 0.625 |
dinB_4 | ftsW_2 | RS84_03411 | RS84_02608 | DNA polymerase IV. | Lipid II flippase FtsW; Belongs to the SEDS family. | 0.634 |
dinB_4 | lexA | RS84_03411 | RS84_00421 | DNA polymerase IV. | LexA repressor; Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair. | 0.818 |
dinB_4 | recA | RS84_03411 | RS84_03276 | DNA polymerase IV. | Protein RecA; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.786 |
dinB_4 | trmB | RS84_03411 | RS84_03414 | DNA polymerase IV. | tRNA (guanine-N(7)-)-methyltransferase; Catalyzes the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. | 0.771 |
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