Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SDD09816.1 | SDD13097.1 | SAMN04489866_101168 | SAMN04489866_101260 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Stage V sporulation protein B. | 0.618 |
| SDD09816.1 | SDD95214.1 | SAMN04489866_101168 | SAMN04489866_11120 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein. | 0.567 |
| SDD09816.1 | SDD98238.1 | SAMN04489866_101168 | SAMN04489866_11210 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | 0.754 |
| SDD09816.1 | SDE02043.1 | SAMN04489866_101168 | SAMN04489866_11330 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | tRNA (adenine22-N1)-methyltransferase. | 0.695 |
| SDD09816.1 | polC | SAMN04489866_101168 | SAMN04489866_1102 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | DNA polymerase-3 subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.635 |
| SDD09816.1 | whiA | SAMN04489866_101168 | SAMN04489866_10479 | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | Hypothetical protein; Involved in cell division and chromosome segregation. | 0.690 |
| SDD13001.1 | SDD13054.1 | SAMN04489866_101258 | SAMN04489866_101259 | Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain. | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.734 |
| SDD13001.1 | SDD13097.1 | SAMN04489866_101258 | SAMN04489866_101260 | Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain. | Stage V sporulation protein B. | 0.522 |
| SDD13054.1 | SDD13001.1 | SAMN04489866_101259 | SAMN04489866_101258 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain. | 0.734 |
| SDD13054.1 | SDD13097.1 | SAMN04489866_101259 | SAMN04489866_101260 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Stage V sporulation protein B. | 0.557 |
| SDD13054.1 | purA | SAMN04489866_101259 | SAMN04489866_101261 | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.463 |
| SDD13097.1 | SDD09816.1 | SAMN04489866_101260 | SAMN04489866_101168 | Stage V sporulation protein B. | Hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein. | 0.618 |
| SDD13097.1 | SDD13001.1 | SAMN04489866_101260 | SAMN04489866_101258 | Stage V sporulation protein B. | Ribosomal 50S subunit-recycling heat shock protein, contains S4 domain. | 0.522 |
| SDD13097.1 | SDD13054.1 | SAMN04489866_101260 | SAMN04489866_101259 | Stage V sporulation protein B. | Bacterial nucleoid protein Hbs; Histone-like DNA-binding protein which is capable of wrapping DNA to stabilize it, and thus to prevent its denaturation under extreme environmental conditions. | 0.557 |
| SDD13097.1 | SDD13373.1 | SAMN04489866_101260 | SAMN04489866_101266 | Stage V sporulation protein B. | Uncharacterized conserved protein YloU, alkaline shock protein (Asp23) family. | 0.601 |
| SDD13097.1 | SDD95214.1 | SAMN04489866_101260 | SAMN04489866_11120 | Stage V sporulation protein B. | Hypothetical protein. | 0.518 |
| SDD13097.1 | SDD98238.1 | SAMN04489866_101260 | SAMN04489866_11210 | Stage V sporulation protein B. | Uncharacterized protein, UPF0297 family; Belongs to the UPF0297 family. | 0.765 |
| SDD13097.1 | SDE02043.1 | SAMN04489866_101260 | SAMN04489866_11330 | Stage V sporulation protein B. | tRNA (adenine22-N1)-methyltransferase. | 0.662 |
| SDD13097.1 | polC | SAMN04489866_101260 | SAMN04489866_1102 | Stage V sporulation protein B. | DNA polymerase-3 subunit alpha; Required for replicative DNA synthesis. This DNA polymerase also exhibits 3' to 5' exonuclease activity. | 0.585 |
| SDD13097.1 | purA | SAMN04489866_101260 | SAMN04489866_101261 | Stage V sporulation protein B. | Adenylosuccinate synthetase; Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP; Belongs to the adenylosuccinate synthetase family. | 0.749 |
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