STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD06005.1Phage portal protein, putative, A118 family. (442 aa)    
Predicted Functional Partners:
SDD06047.1
Toxin 50.
 
    0.973
SDD05958.1
Phage terminase, large subunit, PBSX family.
 
    0.953
SDD06539.1
Bacteriophage Gp15 protein.
 
    0.870
SDD05915.1
Phage terminase small subunit.
 
    0.818
SDD06089.1
Hypothetical protein.
       0.773
SDD06445.1
Hypothetical protein.
  
    0.692
SDD05871.1
Fic family protein.
       0.603
SDD06580.1
Phage tail tape measure protein, TP901 family, core region.
 
     0.494
SDD06627.1
Phage-related protein.
  
    0.467
SDD06132.1
Hypothetical protein.
       0.456
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.