STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD32286.1Sortase B. (233 aa)    
Predicted Functional Partners:
SDD71382.1
MacB-like core domain-containing protein.
  
     0.559
SDD32239.1
Rubrerythrin.
       0.543
SDD32331.1
3-oxoacyl-[acyl-carrier protein] reductase.
       0.536
SDD82211.1
Conserved repeat domain-containing protein/fimbrial isopeptide formation D2 domain-containing protein.
 
 
   0.507
SDD30432.1
Ferrous iron transport protein A.
  
     0.481
SDD40033.1
Iron complex transport system substrate-binding protein.
 
  
 0.478
SDD56793.1
Putative ABC transport system permease protein.
  
     0.446
SDD54131.1
Zinicin-like metallopeptidase.
  
     0.439
SDE04403.1
Cna protein B-type domain-containing protein.
  
 
   0.418
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.