STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD43441.1BMC domain-containing protein. (100 aa)    
Predicted Functional Partners:
SDD43397.1
BMC domain-containing protein.
    
0.977
SDD43891.1
Ethanolamine utilization protein EutN.
 
 
 
 0.968
SDD43342.1
Hypothetical protein.
       0.757
SDD43489.1
Acyl-CoA reductase.
  
  
 0.735
SDD43296.1
Hypothetical protein.
       0.731
SDD43637.1
Ethanolamine utilization protein EutS.
 
  
 0.701
SDD43683.1
Ethanolamine utilization protein EutP.
 
  
 0.683
SDD43784.1
Ethanolamine utilization protein EutJ.
 
    0.671
cutC
Formate C-acetyltransferase; Glycine radical enzyme that catalyzes the cleavage of a C-N bond in choline, producing trimethylamine (TMA) and acetaldehyde. Belongs to the glycyl radical enzyme (GRE) family. CutC subfamily.
       0.664
SDD43987.1
Carboxysome shell and ethanolamine utilization microcompartment protein CcmL/EutN.
 
   
 0.641
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.