STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD54131.1Zinicin-like metallopeptidase. (128 aa)    
Predicted Functional Partners:
SDD54174.1
Ribosomal small subunit pseudouridine synthase A; Belongs to the pseudouridine synthase RsuA family.
       0.776
SDD54093.1
Hemolysin, contains CBS domains.
       0.773
SDD54206.1
Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like.
       0.773
SDD54269.1
Hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
       0.773
SDD54053.1
Rrf2 family protein.
       0.762
SDD54007.1
Hypothetical protein.
       0.542
SDD79976.1
DNA replication and repair protein RadC; Belongs to the UPF0758 family.
  
  
 0.458
SDE11244.1
DNA repair protein RadC.
  
  
 0.458
SDE14468.1
DNA repair protein RadC.
  
  
 0.458
SDD32286.1
Sortase B.
  
     0.439
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.