STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD66808.1Amino acid transporter. (479 aa)    
Predicted Functional Partners:
SDD58439.1
S-layer homology domain-containing protein.
   
 0.858
SDD64260.1
Listeria/Bacterioides repeat-containing protein.
   
 0.858
SDE09458.1
S-layer homology domain-containing protein.
   
 0.858
SDD09945.1
His Kinase A (phospho-acceptor) domain-containing protein.
 
 
  
 0.839
aroK
Shikimate kinase; Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate; Belongs to the shikimate kinase family.
   
 0.687
SDD64882.1
Chorismate mutase.
   
 0.628
SDD66855.1
Taurine---2-oxoglutarate transaminase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
     
 0.583
SDD66772.1
Amino acid transporter.
 
    
0.501
SDD39504.1
NADPH-dependent 2,4-dienoyl-CoA reductase, sulfur reductase.
  
 
 0.449
SDD88713.1
Na+/H+ antiporter NhaC.
  
     0.409
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.