STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD79877.1Signal transduction histidine kinase. (481 aa)    
Predicted Functional Partners:
SDD79925.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.978
SDD83321.1
Response regulator receiver domain-containing protein.
  0.945
SDD89471.1
Two-component system, OmpR family, response regulator.
  0.936
SDE01817.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.936
SDD45613.1
Two-component system, OmpR family, alkaline phosphatase synthesis response regulator PhoP.
  0.900
SDD55771.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.893
SDD86756.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 0.892
SDD65674.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
  0.844
SDD52402.1
DNA-binding response regulator, OmpR family, contains REC and winged-helix (wHTH) domain.
 
  0.842
SDD98354.1
Serine phosphatase RsbU, regulator of sigma subunit.
 
 
  0.825
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.