STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDE12389.1Type I restriction enzyme, S subunit. (461 aa)    
Predicted Functional Partners:
SDE12424.1
Type I restriction enzyme M protein.
 
 0.996
SDE12322.1
Type I restriction enzyme, R subunit.
 
  
 0.979
SDE10130.1
Hypothetical protein.
  
 
 0.938
SDE12353.1
Uncharacterized conserved protein.
  
    0.878
SDE12279.1
Protein of unknown function.
  
  
 0.763
atpF
ATP synthase F0 subcomplex B subunit; Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0); Belongs to the ATPase B chain family.
    
 
 0.636
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
   
 
 0.575
SDE12475.1
Hypothetical protein.
       0.514
SDE12237.1
Restriction system protein.
  
  
 0.483
SDD31320.1
Putative ATP-dependent DNA helicase recG C-terminal.
  
    0.459
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.