STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDD09164.1ATP-binding cassette, subfamily B. (598 aa)    
Predicted Functional Partners:
ecfA
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.921
SDD65603.1
Putative ABC transport system ATP-binding protein.
 
     
0.899
SDD09126.1
ATP-binding cassette, subfamily B.
 
    
0.870
SDE10977.1
ABC transporter transmembrane region.
 
 
 
0.798
SDD71334.1
Putative ABC transport system ATP-binding protein.
 
     
0.769
ecfA-2
Energy-coupling factor transport system ATP-binding protein; ATP-binding (A) component of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates.
 
  
 
0.759
ftsE
Cell division ATP-binding protein FtsE; Part of the ABC transporter FtsEX involved in cellular division.
 
     
0.734
dnaK
Molecular chaperone DnaK; Acts as a chaperone; Belongs to the heat shock protein 70 family.
  
 0.512
SDD31172.1
ABC-2 type transport system ATP-binding protein.
  
  0.493
SDD40576.1
ABC-2 type transport system ATP-binding protein.
  
 
0.466
Your Current Organism:
Peptococcus niger
NCBI taxonomy Id: 2741
Other names: ATCC 27731, DSM 20475, JCM 6506, Micrococcus niger, NCTC 11805, P. niger, VPI 7953
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