Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
dvnTFunction of homologous gene experimentally demonstrated in an other organism; transporter. (819 aa)    
Predicted Functional Partners:
glnQ
Glutamine ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
     
0.814
metN
Methionine ABC transporter (ATP-binding protein); Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.736
yxdL
ABC transporter ATP-binding protein YxdL.
 
 
   
0.589
SBO17135.1
Function of strongly homologous gene; cell process.
 
  
 0.580
dvnV
Divercin V41, class IIa bacteriocin; Bacteriocin with antibacterial activity against many strains of L.monocytogenes, L.seeligeri, L.welshimeri, L.grayi, L.murayi, L.ivanovii, L.innocus, C.divergens and C.piscocola. No antibacterial activity was detected against L.lactis, P.acidilactici, P.pentosaceus, L.salivarius, L.delbruekii, L.acidophilus, L.plantarum, L.casei, L.rhamnosus, S.thermophilus, P.freudenreichii, B.breve and E.coli.
       0.565
metN-2
Methionine ABC transporter (ATP-binding protein); Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system.
 
     
0.542
dvnI
Divercin immunity protein; Function of homologous gene experimentally demonstrated in an other organism; cell process.
  
    0.481
SBO16635.1
Exported hypothetical protein; No homology to any previously reported sequences.
       0.450
lmrA
ABC transporter transmembrane region family protein.
 
 
0.428
yfiC-3
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
0.425
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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