STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO16724.1Type II secretion system, TadB family; Function of strongly homologous gene; transporter. (318 aa)    
Predicted Functional Partners:
SBO16723.1
Type II secretion system protein, TadA subfamily; Function of strongly homologous gene; transporter.
 
  
 0.974
SBO16725.1
Type II secretion system protein; Function of strongly homologous gene; transporter.
 
     0.949
SBO16722.1
Hypothetical protein; No homology to any previously reported sequences.
 
     0.940
SBO16735.1
Prepilin type IV endopeptidase; Function of strongly homologous gene; enzyme.
 
  
 0.910
SBO16727.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.762
SBO16726.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.624
SBO16734.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.619
SBO18543.1
Putative Signaling protein YkoW; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
    0.581
SBO16728.1
Hypothetical protein; No homology to any previously reported sequences.
       0.548
SBO16729.1
Exported hypothetical protein; No homology to any previously reported sequences.
       0.446
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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