STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO16834.1ABC transporter family protein. (233 aa)    
Predicted Functional Partners:
SBO16835.1
Permease family protein.
 
 
 0.992
SBO17004.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.971
SBO18330.1
Efflux ABC transporter, permease protein.
   0.953
SBO17129.1
Putative ABC-type antimicrobial peptide transport system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
   0.892
SBO16788.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     
0.617
yfiC
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     
0.611
artQ
Amino ABC transporter, permease, 3-TM region,His/Glu/Gln/Arg/opine family domain protein.
 
 
    0.608
dppC
Dipeptide ABC transporter (permease); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
    0.583
yfiC-2
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
     
0.581
macB-2
Putative fused macrolide ABC transporter, ATP-binding protein and permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
  
0.564
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.