STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ndoAEndoribonuclease toxin; Toxic component of a type II toxin-antitoxin (TA) system. (116 aa)    
Predicted Functional Partners:
SBO17320.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
 
 0.961
alrA
D-alanine racemase; Catalyzes the interconversion of L-alanine and D-alanine. May also act on other amino acids; Belongs to the alanine racemase family.
       0.534
SBO17322.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
       0.518
acpS
Holo-acyl carrier protein synthase; Transfers the 4'-phosphopantetheine moiety from coenzyme A to a Ser of acyl-carrier-protein; Belongs to the P-Pant transferase superfamily. AcpS family.
     
 0.501
ykvN
Uncharacterized HTH-type transcriptional regulator YkvN.
   
    0.418
SBO17021.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
    0.418
SBO17627.1
Conserved hypothetical protein, mobile region; Homologs of previously reported genes of unknown function.
   
    0.418
ytcD
Putative transcriptional regulator (MarD family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
   
    0.418
arxR
Transcriptional repressor; Function of homologous gene experimentally demonstrated in an other organism; regulator.
   
    0.418
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
Server load: low (10%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.