STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO17385.1Putative Mga helix-turn-helix domain protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (479 aa)    
Predicted Functional Partners:
SBO17386.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.773
SBO17024.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.732
SBO17387.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.714
csc1B-6
Cell surface protein with WxL domain.
 
     0.596
csc2B-3
Cell surface protein with WxL domain.
 
     0.568
cbiQ-2
Cobalt transport family protein.
  
    0.548
SBO16902.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.542
SBO18485.1
Putative ABC transporter ATP-binding protein BCE_3323; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.491
SBO17364.1
Conserved repeat domain.
  
     0.477
SBO16309.1
Conserved repeat domain (modular protein).
  
     0.471
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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