STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ulaD3-keto-L-gulonate 6-phosphate decarboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (213 aa)    
Predicted Functional Partners:
sgbU
Putative L-xylulose 5-phosphate 3-epimerase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
  
 0.991
araD
L-ribulose-5-phosphate 4-epimerase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
 0.950
ulaB
Ascorbate-specific phosphotransferase enzyme IIB component.
 
  
 0.932
ulaA
Ascorbate-specific permease IIC component UlaA.
 
   
 0.908
ulaC
L-ascorbate-specific enzyme IIA component of PTS; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.907
ulaG
Putative L-ascorbate 6-phosphate lactonase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme.
 
   
 0.893
SBO17547.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.656
mdxF
Maltodextrin ABC transport system (permease); Function of homologous gene experimentally demonstrated in an other organism; transporter.
   
    0.511
SBO16329.1
PRD domain protein.
 
  
 0.440
nifJ
Pyruvate-flavodoxin oxidoreductase.
      
 0.435
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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