STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO17646.1MFS general substrate transporter; Function of strongly homologous gene; transporter. (394 aa)    
Predicted Functional Partners:
SBO17645.1
Transcriptional regulator (ArsR family); Function of strongly homologous gene; regulator.
 
    0.803
SBO17647.1
Nitroreductase.
       0.773
SBO17866.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.589
SBO17135.1
Function of strongly homologous gene; cell process.
  
  
 0.566
SBO17131.1
NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process.
  
  
 0.513
SBO17642.1
Geranylgeranyl transferase type II beta subunit; Function of strongly homologous gene; enzyme.
      0.500
SBO17134.1
Function of strongly homologous gene; cell process.
  
  
 0.462
SBO17788.1
Drug resistance transporter, Bcr/CflA subfamily protein.
  
   
 0.460
SBO17648.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.455
tyrP
Amino acid permease family protein.
  
     0.450
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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