STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ypiBConserved hypothetical protein; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0302 family. (185 aa)    
Predicted Functional Partners:
ypiA
Tetratricopeptide repeat family protein.
 
     0.783
ypjD
Nucleotide phosphohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
     0.755
SBO17708.1
Putative 3-dehydroquinate synthase family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.731
SBO16824.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.722
SBO17328.1
YycH family protein.
  
     0.679
SBO18277.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.667
dnaD
DnaD and phage-associated domain protein.
 
     0.632
cca
tRNA nucleotidyltransferase; Catalyzes the addition and repair of the essential 3'- terminal CCA sequence in tRNAs without using a nucleic acid template. Adds these three nucleotides in the order of C, C, and A to the tRNA nucleotide-73, using CTP and ATP as substrates and producing inorganic pyrophosphate.
       0.629
SBO18270.1
Putative secreted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.626
SBO17718.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.625
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.