STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dnaDDnaD and phage-associated domain protein. (239 aa)    
Predicted Functional Partners:
nth
Endonuclease III; DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N-glycosidic bond, leaving an AP (apurinic/apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'- phosphate.
  
  
 0.898
dnaI
Helicase loader; Function of homologous gene experimentally demonstrated in an other organism; factor.
 
  
 0.849
SBO17718.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.792
dnaB
Replication initiation and membrane attachment protein.
  
   
 0.766
ypjD
Nucleotide phosphohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
    0.749
dinG
DnaQ exonuclease/DinG family helicase; 3'-5' exonuclease.
 
  
 0.701
ypiB
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; ; Belongs to the UPF0302 family.
 
     0.624
comFA
Helicase competence protein; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
     0.603
asnS
asparaginyl-tRNA synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
    0.596
SBO16296.1
Initiation-control protein YabA; Involved in initiation control of chromosome replication. Belongs to the YabA family.
  
     0.592
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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