STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpAPenicillin-binding, 1A family protein. (865 aa)    
Predicted Functional Partners:
recU
Holliday junction resolvase; Endonuclease that resolves Holliday junction intermediates in genetic recombination. Cleaves mobile four-strand junctions by introducing symmetrical nicks in paired strands. Promotes annealing of linear ssDNA with homologous dsDNA. Required for DNA repair, homologous recombination and chromosome segregation; Belongs to the RecU family.
  
 0.911
gpsB
Cell division protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
 
 
 
 0.841
pbpB
Penicillin-binding protein 2B; Function of homologous gene experimentally demonstrated in an other organism; cell process.
 
 
 
 0.802
murC
UDP-N-acetyl muramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.754
mrdB
Rod shape-determining protein RodA; Belongs to the SEDS family.
  
 
 
 0.751
pbpA-2
Transpeptidase (penicillin-binding protein 2A); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 
 0.750
ftsW
Cell cycle family protein; Belongs to the SEDS family.
  
 
 
 0.744
ftsW-2
Cell-division protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the SEDS family.
  
 
 
 0.731
SBO16746.1
Peptidase M23 family protein.
 
  
 0.697
ftsW-3
Cell cycle family protein; Belongs to the SEDS family.
  
 
 
 0.674
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
Server load: low (34%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.