STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO17764.1Transcription regulator; Belongs to the LysR transcriptional regulatory family. (317 aa)    
Predicted Functional Partners:
ppaC
Inorganic pyrophosphatase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
       0.616
ltrB
Polysaccharide biosynthesis family protein.
  
     0.600
pflA
Pyruvate formate lyase activating enzyme 1; Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine; Belongs to the organic radical-activating enzymes family.
       0.517
SBO17135.1
Function of strongly homologous gene; cell process.
  
  
 0.487
mazG
MazG nucleotide pyrophosphohydrolase domain protein.
  
     0.457
SBO17131.1
NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process.
  
  
 0.436
glnR
Transcriptional regulator (nitrogen metabolism); Function of homologous gene experimentally demonstrated in an other organism; regulator.
  
   
 0.434
pflB
Pyruvate formate lyase I; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
     
 0.420
SBO17188.1
Transcriptional regulator, LysR family; Belongs to the LysR transcriptional regulatory family.
  
     0.408
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
 
 0.405
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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