STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ybbWAllantoin or uracil transporter; Function of homologous gene experimentally demonstrated in an other organism; transporter. (488 aa)    
Predicted Functional Partners:
allB
Allantoinase; Catalyzes the conversion of allantoin (5-ureidohydantoin) to allantoic acid by hydrolytic cleavage of the five-member hydantoin ring; Belongs to the metallo-dependent hydrolases superfamily. Allantoinase family.
 
  
 0.965
allC
Allantoate amidohydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
  
 0.815
ylbA
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.783
SBO17805.1
Purine catabolism regulatory-like family protein.
 
   
 0.743
o
Sugar (And other) transporter family protein.
 
    0.656
SBO17815.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
  
 0.554
yjmC-2
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.507
pbuX
Xanthine permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
 0.490
yjmC
Putative oxidoreductase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the LDH2/MDH2 oxidoreductase family.
 
    0.490
SBO17807.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.480
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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