STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
yahGConserved hypothetical protein; Homologs of previously reported genes of unknown function. (421 aa)    
Predicted Functional Partners:
fdrA
Protein fdrA.
     0.990
SBO17807.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.950
o
Sugar (And other) transporter family protein.
 
    0.839
CBK
Carbamate kinase; Belongs to the carbamate kinase family.
 
  
 0.834
SBO17815.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.829
nifJ
Pyruvate-flavodoxin oxidoreductase.
  
  
 0.821
SBO17805.1
Purine catabolism regulatory-like family protein.
 
     0.766
ylbA
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
    0.739
citZ
Citrate synthase II; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the citrate synthase family.
  
 
 0.708
atpH
ATP synthase F1, delta subunit; F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation.
  
 
 0.702
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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