STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
trmKtRNA (adenine(22)-N(1))-methyltransferase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (233 aa)    
Predicted Functional Partners:
yqfO
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
  
 0.991
addA
ATP-dependent helicase/nuclease subunit A; ATP-dependent DNA helicase.
 
     0.846
rexB
ATP-dependent helicase/deoxyribonuclease subunit B; ATP-dependent DNA helicase; Belongs to the helicase family. AddB/RexB type 2 subfamily.
 
     0.815
SBO17828.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.769
pepT
Peptidase T (tripeptidase); Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
  
    0.761
ylxM
Conserved hypothetical protein; Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY/ffh. May be a regulatory protein.
  
     0.747
yrzL
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the UPF0297 family.
  
     0.710
SBO17827.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.607
SBO17832.1
Hypothetical protein; No homology to any previously reported sequences.
       0.588
whiA
Putative morphogen; Involved in cell division and chromosome segregation.
  
     0.582
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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