Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SBO17131.1 | dgkA | CDIV41_270145 | CDIV41_320414 | NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process. | Undecaprenol kinase. | 0.444 |
SBO17131.1 | yqfG | CDIV41_270145 | CDIV41_320415 | NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process. | Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.986 |
SBO17853.1 | cdd | CDIV41_320416 | CDIV41_320413 | HD domain protein. | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | 0.781 |
SBO17853.1 | dgkA | CDIV41_320416 | CDIV41_320414 | HD domain protein. | Undecaprenol kinase. | 0.843 |
SBO17853.1 | era | CDIV41_320416 | CDIV41_320412 | HD domain protein. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.781 |
SBO17853.1 | phoH | CDIV41_320416 | CDIV41_320417 | HD domain protein. | Phosphate starvation-induced protein; Function of homologous gene experimentally demonstrated in an other organism; phenotype. | 0.797 |
SBO17853.1 | recO | CDIV41_320416 | CDIV41_320411 | HD domain protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.614 |
SBO17853.1 | rpsU | CDIV41_320416 | CDIV41_320419 | HD domain protein. | Ribosomal protein S21; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bS21 family. | 0.468 |
SBO17853.1 | yqeY | CDIV41_320416 | CDIV41_320418 | HD domain protein. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.506 |
SBO17853.1 | yqfG | CDIV41_320416 | CDIV41_320415 | HD domain protein. | Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.854 |
cdd | SBO17853.1 | CDIV41_320413 | CDIV41_320416 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | HD domain protein. | 0.781 |
cdd | dgkA | CDIV41_320413 | CDIV41_320414 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Undecaprenol kinase. | 0.795 |
cdd | era | CDIV41_320413 | CDIV41_320412 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | GTP-binding protein; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.917 |
cdd | phoH | CDIV41_320413 | CDIV41_320417 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Phosphate starvation-induced protein; Function of homologous gene experimentally demonstrated in an other organism; phenotype. | 0.861 |
cdd | recO | CDIV41_320413 | CDIV41_320411 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.720 |
cdd | rpsU | CDIV41_320413 | CDIV41_320419 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Ribosomal protein S21; Function of homologous gene experimentally demonstrated in an other organism; structure; Belongs to the bacterial ribosomal protein bS21 family. | 0.479 |
cdd | yqeY | CDIV41_320413 | CDIV41_320418 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.497 |
cdd | yqfG | CDIV41_320413 | CDIV41_320415 | Cytidine/deoxycytidine deaminase; This enzyme scavenges exogenous and endogenous cytidine and 2'-deoxycytidine for UMP synthesis; Belongs to the cytidine and deoxycytidylate deaminase family. | Putative metal-dependent hydrolase; Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA. | 0.955 |
dgkA | SBO17131.1 | CDIV41_320414 | CDIV41_270145 | Undecaprenol kinase. | NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process. | 0.444 |
dgkA | SBO17853.1 | CDIV41_320414 | CDIV41_320416 | Undecaprenol kinase. | HD domain protein. | 0.843 |
page 1 of 4