STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
srtBConserved hypothetical protein; Homologs of previously reported genes of unknown function. (240 aa)    
Predicted Functional Partners:
isdE
High-affinity heme uptake system protein IsdE.
 
  
 0.921
cinA
Competence-damage inducible regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator; Belongs to the CinA family.
     0.919
fhuC
Iron(3+)-hydroxamate import ATP-binding protein FhuC; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.866
isdF
Putative heme-iron transport system permease protein IsdF; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily.
 
  
 0.837
isdC
Heme uptake protein IsdC.
  
  
 0.710
svpA
Sortase B cell surface sorting signal domain protein.
  
  
 0.705
SBO17134.1
Function of strongly homologous gene; cell process.
   
  
 0.571
SBO16067.1
ABC transporter; Function of strongly homologous gene; transporter.
  
  
 0.498
SBO18270.1
Putative secreted protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
   
 0.480
SBO17004.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
   
 0.447
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.