STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
SBO17960.1Putative transcriptional regulator (GntR family); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (132 aa)    
Predicted Functional Partners:
SBO17959.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.920
SBO16621.1
Transcriptional regulator, GntR family.
  
     0.747
SBO16620.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
    0.598
SBO16583.1
ABC transporter, ATP-binding protein; Function of strongly homologous gene; transporter.
 
    0.592
SBO17961.1
Rrf2 family protein.
  
    0.525
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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