STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SBO17965.1Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (271 aa)    
Predicted Functional Partners:
SBO17966.1
ABC transporter family protein.
 
 
 0.970
SBO17014.1
Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
     0.615
chiB
Chitinase B.
  
     0.595
SBO16343.1
Exported hypothetical protein; No homology to any previously reported sequences.
  
     0.569
SBO18400.1
Putative accessory gene regulator B, AgrB; May be involved in the proteolytic processing of a quorum sensing system signal molecule precursor; Belongs to the AgrB family.
  
     0.529
SBO17967.1
Hypothetical protein; No homology to any previously reported sequences.
       0.525
chiA
Chitinase; Belongs to the glycosyl hydrolase 18 family.
  
     0.421
SBO17968.1
Aminotransferase class I and II.
  
    0.403
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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