Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
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[Homology]
Score
copZ-2Copper chaperone CopZ. (71 aa)    
Predicted Functional Partners:
copY
Transcriptional repressor CopY.
  
  
 0.894
cadA
Putative cadmium-transporting ATPase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.652
zosA
Zinc-transporting ATPase.
  
 
 0.652
copA
Copper transporter ATPase; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
 
 0.652
cadA-2
Cadmium-/zinc-/cobalt-transporting ATPase.
  
 
 0.652
copB
Copper-exporting P-type ATPase B.
  
 
 0.652
SBO17976.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.486
artR-3
High affinity arginine ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.458
glnPH
Amino ABC transporter, permease, 3-TM region,His/Glu/Gln/Arg/opine family domain protein.
       0.447
SBO16432.1
MarR family transcriptional regulator.
 
  
 0.434
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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