STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SBO17986.1Putative membrane protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology. (529 aa)    
Predicted Functional Partners:
SBO17984.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
 
     0.912
SBO17985.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.801
SBO17983.1
Phage structural domain protein.
       0.786
SBO17981.1
Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase (fragment).
   
   0.752
SBO17987.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.750
SBO17982.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.707
SBO17988.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
       0.626
SBO16462.1
Hypothetical protein; No homology to any previously reported sequences.
  
     0.522
SBO17989.1
Major tail protein 17.1.
       0.483
SBO16668.1
Putative ABC transporter, permease protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
     0.443
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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