Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
hssSHeme sensor protein HssS. (458 aa)    
Predicted Functional Partners:
hssR
Heme response regulator HssR.
 
 0.979
walR
Two-component response regulator (YycF); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.936
rbsB
Ribose ABC transporter (ribose-binding lipoprotein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
    0.901
resD
Two-component response regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.872
phoP
Two-component response regulator; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.858
vanR
Regulatory protein VanR.
 
 0.842
ykoG
Two-component response regulator (YkoH); Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
 0.838
vanRB
Regulatory protein VanRB.
 
 
 0.827
arcA-2
Response regulator.
 
 0.827
dvnR
Function proposed based on presence of conserved amino acid motif, structural feature or limited homology;putative fragment of ABC transporter.
 
 
 0.814
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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