STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO18014.1Permease family protein. (362 aa)    
Predicted Functional Partners:
hrtA
Putative hemin import ATP-binding protein HrtA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.945
hrtA-2
Putative hemin import ATP-binding protein HrtA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 0.783
hssS
Heme sensor protein HssS.
 
     0.692
macB-2
Putative fused macrolide ABC transporter, ATP-binding protein and permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.634
SBO17135.1
Function of strongly homologous gene; cell process.
  
 
 0.562
macB
Efflux transporter, RND family, MFP subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter;fragment of fused macrolide transporter subunits of ABC superfamily: ATP-binding component; membrane component (part 1).
  
 
 0.530
SBO16795.1
Putative periplasmic component of efflux system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.530
SBO18332.1
Efflux system associated periplasmic component.
  
 
 0.530
hssR
Heme response regulator HssR.
       0.510
SBO18444.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.504
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.