Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pepFFunction of homologous gene experimentally demonstrated in an other organism; enzyme. (602 aa)    
Predicted Functional Partners:
SBO18070.1
Putative Protein involved in establishment of DNA transport in competence; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
     
 0.703
yqhT
Putative aminopeptidase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme; Belongs to the peptidase M24B family.
  
   
 0.644
pepT
Peptidase T (tripeptidase); Cleaves the N-terminal amino acid of tripeptides. Belongs to the peptidase M20B family.
   
  
 0.607
pepQ
Xaa-Pro dipeptidase; Belongs to the peptidase M24B family.
      
 0.589
mecA
Adapter protein MecA; Enables the recognition and targeting of unfolded and aggregated proteins to the ClpC protease or to other proteins involved in proteolysis.
       0.556
map
Putative methionine aminopeptidase A; Removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val). Requires deformylation of the N(alpha)-formylated initiator methionine before it can be hydrolyzed; Belongs to the peptidase M24A family. Methionine aminopeptidase type 1 subfamily.
     
 0.484
dtpT
Di-tripeptide-proton ABC symporter; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.478
purR
Transcriptional regulator of the purine biosynthesis operon; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.448
ampS
Aminopeptidase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
   
 0.445
lysP
Lysine-specific permease; Function of homologous gene experimentally demonstrated in an other organism; transporter.
      
 0.429
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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