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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
oppDOligopeptide ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily. (375 aa)    
Predicted Functional Partners:
dppC
Dipeptide ABC transporter (permease); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.999
oppB
Oligopeptide ABC transporter (permease); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 0.999
oppF
Oligopeptide ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the ABC transporter superfamily.
 
 
0.996
oppA-2
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.994
oppA
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.993
oppA-3
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.993
oppA-4
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.993
oppA-5
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.993
oppA-6
Bacterial extracellular solute-binding s, 5 Middle family protein.
 
 0.993
SBO16384.1
Putative ABC transporter ATP-binding protein EF_2153; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
  
0.590
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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