STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
SBO18087.1Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function. (668 aa)    
Predicted Functional Partners:
bceA
Bacitracin ABC efflux transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.993
hpk-3
His Kinase A domain protein.
 
   
 0.936
bceR
Glycopeptide resistance-associated protein R; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   
 0.876
yvcR
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
 0.839
yxdL
ABC transporter ATP-binding protein YxdL.
 
 
 0.787
SBO18444.1
Hypothetical protein; No homology to any previously reported sequences.
  
  
 0.543
SBO17135.1
Function of strongly homologous gene; cell process.
  
 
 0.508
SBO16795.1
Putative periplasmic component of efflux system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.495
yclH
Putative ABC transporter (ATPase component); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.470
SBO17131.1
NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process.
  
 
 0.465
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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