STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO18087.1Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function. (668 aa)    
Predicted Functional Partners:
bceA
Bacitracin ABC efflux transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 0.976
hpk-3
His Kinase A domain protein.
 
 
 
 0.894
yvcR
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 0.880
bceR
Glycopeptide resistance-associated protein R; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
     0.865
yxdL
ABC transporter ATP-binding protein YxdL.
 
 0.841
macB-2
Putative fused macrolide ABC transporter, ATP-binding protein and permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
 
 0.634
SBO16795.1
Putative periplasmic component of efflux system; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
 
 
 0.593
SBO17135.1
Function of strongly homologous gene; cell process.
  
 
 0.562
SBO17638.1
Putative conjugative transposon protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative cell process.
  
 
 0.550
macB
Efflux transporter, RND family, MFP subunit; Function of homologous gene experimentally demonstrated in an other organism; transporter;fragment of fused macrolide transporter subunits of ABC superfamily: ATP-binding component; membrane component (part 1).
  
 
 0.530
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.