STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bceABacitracin ABC efflux transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter. (255 aa)    
Predicted Functional Partners:
SBO18087.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
 0.993
SBO18330.1
Efflux ABC transporter, permease protein.
   0.955
hpk-3
His Kinase A domain protein.
 
 
 0.944
SBO16644.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
 
 0.892
SBO17482.1
ABC transporter, permease protein.
 
 
 0.890
SBO16835.1
Permease family protein.
  
 
 0.833
SBO17004.1
Putative permease; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
 
 0.833
bceR
Glycopeptide resistance-associated protein R; Function of homologous gene experimentally demonstrated in an other organism; regulator.
 
   
 0.795
dppC
Dipeptide ABC transporter (permease); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
 
  
 0.733
SBO17369.1
Putative ABC transporter ATP-binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
  
    0.658
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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