STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SBO18096.1Putative transcriptional regulator; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator. (247 aa)    
Predicted Functional Partners:
SBO18099.1
Putative transcriptional regulator, MerR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative regulator.
  
     0.644
dnaJ
Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...]
  
 
 0.621
SBO16342.1
Transcriptional activator (fragment).
  
     0.616
SBO18095.1
ABC transporter.
 
    0.612
nrdD
Uncharacterized ABC transporter ATP-binding protein TM_0288; Function of homologous gene experimentally demonstrated in an other organism; enzyme;fragment of anaerobic ribonucleoside-triphosphate reductase (part 1).
  
    0.560
glnA
Glutamine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 
 0.536
SBO17255.1
Putative transcriptional regulator, MerR family; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
  
     0.493
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
 
 0.475
SBO17162.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
  
     0.419
SBO16275.1
Rep protein.
  
    0.416
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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