STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
sftADNA translocase; Function of homologous gene experimentally demonstrated in an other organism; cell process; Belongs to the FtsK/SpoIIIE/SftA family. (903 aa)    
Predicted Functional Partners:
parB
Site-specific DNA-binding protein; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the ParB family.
  
  
 0.680
noc
DNA-binding protein Spo0J-like; Function of homologous gene experimentally demonstrated in an other organism; factor; Belongs to the ParB family.
  
  
 0.651
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity.
 
  
 0.620
murC
UDP-N-acetyl muramate-alanine ligase; Cell wall formation; Belongs to the MurCDEF family.
 
   
 0.594
divIB
Cell division protein DivIB; Cell division protein that may be involved in stabilizing or promoting the assembly of the division complex; Belongs to the FtsQ/DivIB family. DivIB subfamily.
   
 
 0.548
recR
DNA repair and recombination protein; May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO.
 
   
 0.541
xerC
Tyrosine recombinase XerC.
  
  
 0.506
ytpR
Putative tRNA binding protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative factor; Belongs to the phenylalanyl-tRNA synthetase beta subunit family. Type 1 subfamily.
       0.502
SBO18115.1
Conserved hypothetical protein; Homologs of previously reported genes of unknown function.
   
   0.470
dnaA
Chromosomal replication initiator protein DnaA; Plays an important role in the initiation and regulation of chromosomal replication. Binds to the origin of replication; it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box): 5'- TTATC[CA]A[CA]A-3'. DnaA binds to ATP and to acidic phospholipids. Belongs to the DnaA family.
  
  
 0.442
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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