STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hinTHit-family hydrolase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. (142 aa)    
Predicted Functional Partners:
SBO18132.1
Conserved exported hypothetical protein; Homologs of previously reported genes of unknown function.
  
    0.845
nifJ
Pyruvate-flavodoxin oxidoreductase.
   
   0.636
ecsB
Bacterial ABC transporter EcsB family protein.
     
 0.624
ecsA
ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
    0.591
prsA
Foldase protein PrsA; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
  
 
 0.549
yqfO
Conserved hypothetical protein; Homologs of previously reported genes of unknown function; Belongs to the GTP cyclohydrolase I type 2/NIF3 family.
     
 0.451
prsA-2
Foldase protein PrsA; Plays a major role in protein secretion by helping the post- translocational extracellular folding of several secreted proteins.
  
 
 0.431
SBO17131.1
NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process.
  
 
 0.426
SBO17135.1
Function of strongly homologous gene; cell process.
  
 
 0.400
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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