STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
pbpFPenicillin-binding protein 1F. (708 aa)    
Predicted Functional Partners:
pbpB
Penicillin-binding protein 2B; Function of homologous gene experimentally demonstrated in an other organism; cell process.
 
 
0.962
pbpA-2
Transpeptidase (penicillin-binding protein 2A); Function of homologous gene experimentally demonstrated in an other organism; enzyme.
 
 0.961
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the peptidase S11 family.
  
 
 0.926
SBO18371.1
Transglycosylase family protein (fragment).
  
  
0.924
pbpA
Penicillin-binding, 1A family protein.
  
  
 
0.922
SBO16858.1
D-alanyl-D-alanine carboxypeptidase family protein.
     
 0.906
gpsB
Cell division protein; Divisome component that associates with the complex late in its assembly, after the Z-ring is formed, and is dependent on DivIC and PBP2B for its recruitment to the divisome. Together with EzrA, is a key component of the system that regulates PBP1 localization during cell cycle progression. Its main role could be the removal of PBP1 from the cell pole after pole maturation is completed. Also contributes to the recruitment of PBP1 to the division complex. Not essential for septum formation.
   
 
 0.818
ftsW-2
Cell-division protein; Function of homologous gene experimentally demonstrated in an other organism; transporter; Belongs to the SEDS family.
  
 
 
 0.755
ftsW
Cell cycle family protein; Belongs to the SEDS family.
  
 
 
 0.746
murG
Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc transferase; Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II); Belongs to the glycosyltransferase 28 family. MurG subfamily.
  
  
 0.740
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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