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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
arcAArginine deiminase. (410 aa)    
Predicted Functional Partners:
argI
Ornithine carbamoyltransferase 1; Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline.
  
 0.998
arcD-2
Arginine/ornithine antiporter.
 
  
 0.757
arcC
Carbamate kinase 1; Belongs to the carbamate kinase family.
 
   
 0.737
ald
L-alanine dehydrogenase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the AlaDH/PNT family.
      
 0.610
tdc
Putative tyrosine decarboxylase; Function of homologous gene experimentally demonstrated in an other organism; enzyme;fragment of pyridoxine, pyridoxal, and pyridoxamine kinase (part 1).
      
 0.610
arcD
Arginine/ornithine antiporter.
 
  
 0.582
ahpC
Alkyl hydroperoxide reductase (small subunit); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
      
 0.530
SBO17564.1
Putative C4-dicarboxylate anaerobic carrier; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative carrier.
 
     0.455
CBK
Carbamate kinase; Belongs to the carbamate kinase family.
 
   
 0.429
SBO17029.1
Hypothetical protein; No homology to any previously reported sequences.
   
    0.420
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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