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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ccpBCatabolite control protein B. (315 aa)    
Predicted Functional Partners:
rliB
Bacterial regulatory s, gntR family protein.
  
     0.773
mdxR
Transcriptional activator of the maltodextrin operon (LacI family); Function of homologous gene experimentally demonstrated in an other organism; putative regulator.
  
     0.768
SBO17134.1
Function of strongly homologous gene; cell process.
    
   0.651
SBO17135.1
Function of strongly homologous gene; cell process.
    
 
 0.645
dps-2
DNA protection during starvation protein; Belongs to the Dps family.
       0.535
yxjB
Putative 23S rRNA (guanine-N(1)-)-methyltransferase YxjB; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology.
       0.508
fruA
Phosphotransferase system (PTS) fructose-specific enzyme IIABC component; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.471
pyk
Pyruvate kinase; Function of homologous gene experimentally demonstrated in an other organism; enzyme; Belongs to the pyruvate kinase family.
    
 
 0.464
ptsH
Histidine-containing phosphocarrier protein of the phosphotransferase system (PTS) (HPr protein; Function of homologous gene experimentally demonstrated in an other organism; factor.
   
 
 0.436
SBO17131.1
NRPS-PKS protein putatively involved in antibiotic synthese; Function of strongly homologous gene; cell process.
    
 
 0.422
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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