STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dps-2DNA protection during starvation protein; Belongs to the Dps family. (156 aa)    
Predicted Functional Partners:
SBO18610.1
FAD-dependent pyridine nucleotide-disulphide oxidoreductase.
  
  
 0.668
nifJ
Pyruvate-flavodoxin oxidoreductase.
    
 
 0.580
ahpC
Alkyl hydroperoxide reductase (small subunit); Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides; Belongs to the peroxiredoxin family. AhpC/Prx1 subfamily.
  
  
 0.551
ccpB
Catabolite control protein B.
       0.535
hpf
Ribosome-associated sigma 54 modulation protein; Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase; 100S ribosomes are translationally inactive and sometimes present during exponential growth.
  
    0.470
SBO16270.1
Flavodoxin-like fold family protein.
  
  
 0.458
wrbA
Putative Trp repressor binding protein WrbA; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; Belongs to the WrbA family.
  
  
 0.458
ohrB
Organic hydroperoxide resistance reductase B; Function of homologous gene experimentally demonstrated in an other organism; enzyme.
  
  
 0.447
SBO17662.1
OsmC-like family protein.
  
  
 0.447
SBO18380.1
General stress protein.
   
  
 0.401
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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