Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| SBO18159.1 | SBO18160.1 | CDIV41_320722 | CDIV41_320723 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | DegV domain-containing protein CA_C0948. | 0.844 |
| SBO18159.1 | dnaJ | CDIV41_320722 | CDIV41_320455 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...] | 0.615 |
| SBO18159.1 | glnA | CDIV41_320722 | CDIV41_320585 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Glutamine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | 0.460 |
| SBO18159.1 | nifJ | CDIV41_320722 | CDIV41_140119 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Pyruvate-flavodoxin oxidoreductase. | 0.458 |
| SBO18159.1 | phr | CDIV41_320722 | CDIV41_320721 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.565 |
| SBO18159.1 | rpoA | CDIV41_320722 | CDIV41_270119 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.400 |
| SBO18159.1 | rpoB | CDIV41_320722 | CDIV41_270084 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | RNA polymerase (beta subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.411 |
| SBO18159.1 | sigA | CDIV41_320722 | CDIV41_320401 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.407 |
| SBO18159.1 | sigA-2 | CDIV41_320722 | CDIV41_320555 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.407 |
| SBO18159.1 | yplQ | CDIV41_320722 | CDIV41_320302 | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | Putative membrane hydrolase; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative enzyme. | 0.460 |
| SBO18160.1 | SBO18159.1 | CDIV41_320723 | CDIV41_320722 | DegV domain-containing protein CA_C0948. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.844 |
| SBO18160.1 | phr | CDIV41_320723 | CDIV41_320721 | DegV domain-containing protein CA_C0948. | Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family. | 0.518 |
| dnaJ | SBO18159.1 | CDIV41_320455 | CDIV41_320722 | Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...] | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.615 |
| dnaJ | nifJ | CDIV41_320455 | CDIV41_140119 | Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...] | Pyruvate-flavodoxin oxidoreductase. | 0.829 |
| dnaJ | sigA | CDIV41_320455 | CDIV41_320401 | Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...] | RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.483 |
| dnaJ | sigA-2 | CDIV41_320455 | CDIV41_320555 | Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...] | RNA polymerase major sigma-43 factor (sigma-A); Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth. | 0.483 |
| glnA | SBO18159.1 | CDIV41_320585 | CDIV41_320722 | Glutamine synthetase; Function of homologous gene experimentally demonstrated in an other organism; enzyme. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.460 |
| nifJ | SBO18159.1 | CDIV41_140119 | CDIV41_320722 | Pyruvate-flavodoxin oxidoreductase. | Conserved hypothetical protein; Homologs of previously reported genes of unknown function. | 0.458 |
| nifJ | dnaJ | CDIV41_140119 | CDIV41_320455 | Pyruvate-flavodoxin oxidoreductase. | Co-factor of molecular chaperone; Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins and by disaggregating proteins, also in an autonomous, DnaK-independent fashion. Unfolded proteins bind initially to DnaJ; upon interaction with the DnaJ-bound protein, DnaK hydrolyzes its bound ATP, resulting in the formation of a stable complex. GrpE releases ADP from DnaK; ATP binding to DnaK triggers the release of the substrate protein, thus completing the reaction cycle. Several rounds of ATP-dependent interactions betwe [...] | 0.829 |
| nifJ | rpoA | CDIV41_140119 | CDIV41_270119 | Pyruvate-flavodoxin oxidoreductase. | RNA polymerase (alpha subunit); DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.550 |
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