Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
rpiRHelix-turn-helix domain, rpiR family protein. (283 aa)    
Predicted Functional Partners:
ybbF
Phosphosugar-binding transcriptional regulator, RpiR family protein; Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter;fragment of putative PTS system EIIBC component ybbF (part 2).
  
     0.772
murQ
D-lactyl ether N-acetylmuramic-6-phosphate acid etherase; Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6-phosphate and D- lactate.
 
  
 0.571
SBO18179.1
Glyoxalase family protein.
       0.535
SBO18177.1
Cof-like hydrolase family protein.
       0.526
licH
6-phospho-beta-glucosidase; Function of strongly homologous gene; enzyme.
 
  
 0.473
fruA
Phosphotransferase system (PTS) fructose-specific enzyme IIABC component; Function of homologous gene experimentally demonstrated in an other organism; transporter.
     
 0.460
SBO17197.1
PTS system, beta-glucoside-specific IIABC subunit.
  
  
 0.405
SBO17213.1
PTS system, beta-glucoside-specific IIABC component.
  
  
 0.405
bglF
Fused beta-glucoside-specific PTS enzymes: IIA component; Function of homologous gene experimentally demonstrated in an other organism; transporter.
  
  
 0.405
bglP
PTS system beta-glucoside-specific EIIBCA component (Includes: Beta-glucoside-specific phosphotransferase enzyme IIB component; Beta-glucoside permease IIC component; Beta-glucoside-specific phosphotransferase enzyme IIA component).
  
  
 0.405
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
Server load: low (20%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.