Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
lmrAABC transporter transmembrane region family protein. (575 aa)    
Predicted Functional Partners:
yfiC-3
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
 
0.989
artR
High affinity arginine ABC transporter (ATP-binding protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
     
0.900
pstBA
Phosphate ABC transporter (ATP-binding protein); Part of the ABC transporter complex PstSACB involved in phosphate import. Responsible for energy coupling to the transport system; Belongs to the ABC transporter superfamily. Phosphate importer (TC 3.A.1.7) family.
 
     
0.899
SBO17135.1
Function of strongly homologous gene; cell process.
  
 
 0.623
nrdD
Uncharacterized ABC transporter ATP-binding protein TM_0288; Function of homologous gene experimentally demonstrated in an other organism; enzyme;fragment of anaerobic ribonucleoside-triphosphate reductase (part 1).
 
  
0.569
SBO16788.1
Conserved membrane hypothetical protein; Homologs of previously reported genes of unknown function.
 
  
0.563
yfiC-2
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
0.560
yfiC
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
0.556
yknV
Putative ABC transporter (ATP-binding protein); Function proposed based on presence of conserved amino acid motif, structural feature or limited homology; putative transporter.
 
  
0.551
bmrA
Efflux transporter (ATP-binding and permease protein); Function of homologous gene experimentally demonstrated in an other organism; transporter.
 
  
0.539
Your Current Organism:
Carnobacterium divergens
NCBI taxonomy Id: 2748
Other names: ATCC 35677, C. divergens, CCUG 30094, CIP 101029, Carnibacterium divergens, DSM 20623, IFO 15683, JCM 5816, JCM 9133, LMG 9199, LMG:9199, Lactobacillus divergens, NBRC 15683, NCDO 2763, NCIMB 11952, NCTC 13772, NRRL B-14830, strain 66
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