STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
MG2_0705Putative farnesyl-diphosphate farnesyltransferase; Similar to squalene/phytoene synthase. (368 aa)    
Predicted Functional Partners:
MG2_1655
Phytoene dehydrogenase.
 
 
 0.884
MG2_0122
Phytoene dehydrogenase related enzyme.
 
 
 0.836
MG2_1591
Amine oxidase.
 
 
 0.833
MG2_0670
Octaprenyl diphosphate synthase / geranylgeranyl pyrophosphate synthase.
  
 0.785
MG2_1065
Geranylgeranyl diphosphate synthase, type I.
 
 0.785
MG2_1266
Glycosyltransferase family 2/A.
  
 0.756
MG2_0836
Dihydrolipoamide dehydrogenase.
  
 
 0.733
MG2_0420
SAM-dependent methyltransferase.
    
 0.666
MG2_1723
SAM-dependent methyltransferase.
    
 0.666
MG2_0942
Hypothetical protein.
  
  
 0.646
Your Current Organism:
uncultured Poseidoniales archaeon
NCBI taxonomy Id: 274854
Other names: u. Candidatus Poseidoniales archaeon, uncultured Candidatus Poseidoniales archaeon, uncultured marine group II euryarchaeote
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