STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH55_01055Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (327 aa)    
Predicted Functional Partners:
EH55_01045
General secretion pathway protein GspD; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
 
 0.977
EH55_07700
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology; Belongs to the bacterial secretin family.
  
 
 0.958
EH55_01080
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
  
  
 0.827
EH55_01065
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.802
EH55_01070
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.802
EH55_01075
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.801
EH55_01060
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.773
EH55_01085
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.764
EH55_01050
Hypothetical protein; Derived by automated computational analysis using gene prediction method: GeneMarkS+.
       0.648
EH55_01035
Type II secretion protein F; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.609
Your Current Organism:
Synergistes jonesii
NCBI taxonomy Id: 2754
Other names: ATCC 49833, S. jonesii, strain 78-1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.