Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
EH55_09005Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology. (140 aa)    
Predicted Functional Partners:
EH55_06550
Hypothetical protein; Required for the transposition of the insertion element.
 
     0.950
EH55_13645
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.889
EH55_11445
Transposase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.888
EH55_00010
Hypothetical protein; Required for the transposition of the insertion element.
 
      0.887
EH55_01310
Hypothetical protein; Required for the transposition of the insertion element.
 
      0.887
EH55_08380
Transposase; Required for the transposition of the insertion element.
 
      0.887
EH55_09300
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.887
EH55_04030
Transposase; Required for the transposition of the insertion element.
 
      0.886
EH55_00205
Hypothetical protein; Required for the transposition of the insertion element.
 
      0.885
EH55_00610
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
      0.882
Your Current Organism:
Synergistes jonesii
NCBI taxonomy Id: 2754
Other names: ATCC 49833, S. jonesii, strain 78-1
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