STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
EH55_12210NAD/NADP octopine/nopaline dehydrogenase; Derived by automated computational analysis using gene prediction method: Protein Homology. (415 aa)    
Predicted Functional Partners:
EH55_12225
Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
     0.702
EH55_04255
ATP-binding protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
  
 0.641
der
GTP-binding protein Der; GTPase that plays an essential role in the late steps of ribosome biogenesis; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. EngA (Der) GTPase family.
  
  
 0.641
EH55_11930
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.617
EH55_10980
Hypothetical protein; Catalyzes the transfer of the diacylglyceryl group from phosphatidylglycerol to the sulfhydryl group of the N-terminal cysteine of a prolipoprotein, the first step in the formation of mature lipoproteins.
  
    0.570
EH55_12215
Pyruvate formate-lyase; Derived by automated computational analysis using gene prediction method: Protein Homology.
       0.561
EH55_11870
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
    
 0.549
EH55_06405
Sugar isomerase; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.465
EH55_05190
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
  
     0.455
EH55_06365
Hypothetical protein; Derived by automated computational analysis using gene prediction method: Protein Homology.
 
  
  0.445
Your Current Organism:
Synergistes jonesii
NCBI taxonomy Id: 2754
Other names: ATCC 49833, S. jonesii, strain 78-1
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